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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2pzjNADPutative nucleotide sugar epimerase/ dehydratase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/1.000
2q1tNADPutative nucleotide sugar epimerase/ dehydratase/0.540
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.507
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.505
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.485
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.481
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.481
2c20NADUDP-glucose 4-epimerase/0.477
1kvrNADUDP-glucose 4-epimerase5.1.3.20.476
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.470
2p5uNADUDP-glucose 4-epimerase/0.463
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.462
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.461
3sxpNADADP-L-glycero-D-mannoheptose-6-epimerase/0.460
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.451
4lisNADUDP-glucose 4-epimerase (Eurofung)/0.447
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.446
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.444
2q1uNADPutative nucleotide sugar epimerase/ dehydratase/0.441
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.441
1naiNADUDP-glucose 4-epimerase5.1.3.20.440