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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2opmNI9Farnesyl pyrophosphate synthase2.5.1.10

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2opmNI9Farnesyl pyrophosphate synthase2.5.1.101.000
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.561
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.541
3ryeUNRFarnesyl pyrophosphate synthase2.5.1.100.531
3rywK9HFarnesyl pyrophosphate synthase, putative/0.526
3egt722Farnesyl pyrophosphate synthase/0.516
2opnSUFFarnesyl pyrophosphate synthase2.5.1.100.513
3dyh721Farnesyl pyrophosphate synthase/0.511
4h5eYS4Farnesyl pyrophosphate synthase2.5.1.100.503
4demYS4Farnesyl pyrophosphate synthase2.5.1.100.493
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.489
4h5dYS4Farnesyl pyrophosphate synthase2.5.1.100.486
3rbmB73Farnesyl pyrophosphate synthase, putative/0.485
4jvj1MVFarnesyl pyrophosphate synthase2.5.1.100.485
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.479
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.473
4h5cYS4Farnesyl pyrophosphate synthase2.5.1.100.473
1zw5ZOLFarnesyl pyrophosphate synthase2.5.1.100.469
3iczPB6Farnesyl pyrophosphate synthase/0.468
4l2xYL2Farnesyl pyrophosphate synthase2.5.1.100.466
1yq7RISFarnesyl pyrophosphate synthase2.5.1.100.446
4ga34GAFarnesyl pyrophosphate synthase2.5.1.100.446
3v4tUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.442
3krfDSTGeranyl diphosphate synthase large subunit/0.440