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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2oo7AP5Adenylate kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2oo7AP5Adenylate kinase/1.000
2eu8AP5Adenylate kinase/0.782
2qajAP5Adenylate kinase/0.627
4mkgAP5Adenylate kinase/0.599
4mkhAP5Adenylate kinase/0.580
3dl0AP5Adenylate kinase/0.578
4w5jAP5Adenylate kinase/0.578
1zioAP5Adenylate kinase/0.573
4jloADPAdenylate kinase/0.556
3hpqAP5Adenylate kinase/0.550
4typAP5Adenylate kinase/0.548
1e4yAP5Adenylate kinase/0.545
4jl6ADPAdenylate kinase/0.544
3dkvAP5Adenylate kinase/0.538
4qbiAP5Adenylate kinase/0.535
4cf7ADPAdenylate kinase/0.533
1dvrATFAdenylate kinase/0.528
4ikeADPAdenylate kinase/0.528
2osbAP5Adenylate kinase/0.522
1p3jAP5Adenylate kinase/0.517
4nu0AP5Adenylate kinase/0.507
4jl5ADPAdenylate kinase/0.500
4tyqAP5Adenylate kinase/0.499
3tlxADPAdenylate kinase 2/0.485
4jldADPAdenylate kinase/0.485
1akeAP5Adenylate kinase/0.482
1ankANPAdenylate kinase/0.476
4mkfAP5Adenylate kinase/0.475
4jkyADPAdenylate kinase/0.473
2ql6ADPNicotinamide riboside kinase 1/0.468
2oapANPType II secretion system protein (GspE-2)/0.463
3tqcADPPantothenate kinase/0.463
4qbhAP5Adenylate kinase/0.457
3lqfNADGalactitol dehydrogenase/0.448
4x8oAP5Adenylate kinase/0.447
4qedNAPElxO/0.441
4x8lAP5Adenylate kinase/0.441