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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2jj8AZZDeoxynucleoside kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2jj8AZZDeoxynucleoside kinase/1.000
2vqsBVDDeoxynucleoside kinase/0.505
3qen5BTDeoxycytidine kinase2.7.1.740.493
4l5b1UXDeoxycytidine kinase2.7.1.740.492
3qeoLLTDeoxycytidine kinase2.7.1.740.490
2zi63D1Deoxycytidine kinase2.7.1.740.487
4jlm1NNDeoxycytidine kinase2.7.1.740.486
3mjrAC2Deoxycytidine kinase2.7.1.740.485
4jln18VDeoxycytidine kinase2.7.1.740.482
1r8bATPCCA-adding enzyme2.7.7.720.461
2zi53L1Deoxycytidine kinase2.7.1.740.456
3nmpPYVAbscisic acid receptor PYL2/0.446