Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2j7dGI1Beta-glucosidase A3.2.1.21

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2j7dGI1Beta-glucosidase A3.2.1.211.000
2j7cIDEBeta-glucosidase A3.2.1.210.730
2vrjNCWBeta-glucosidase A3.2.1.210.594
2wbgLGSBeta-glucosidase A3.2.1.210.539
3zj6VM2Raucaffricine-O-beta-D-glucosidase3.2.1.1250.484
3u57DH8Raucaffricine-O-beta-D-glucosidase3.2.1.1250.465
3vilSA0Beta-glucosidase/0.462
2fapRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.441
2fapRADSerine/threonine-protein kinase mTOR2.7.11.10.441