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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2j6xFMNLactate oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2j6xFMNLactate oxidase/1.000
2zfaFMNLactate oxidase/0.571
5ebuFMNLactate oxidase/0.570
3giyFMN(S)-mandelate dehydrogenase1.1.99.310.559
2e77FMNLactate oxidase/0.550
2nliFMNLactate oxidase/0.544
4rjeFNRLactate oxidase/0.535
4yl2FMNLactate oxidase/0.535
1kbiFMNCytochrome b2, mitochondrial1.1.2.30.527
1goxFMNPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.524
1kbjFMNCytochrome b2, mitochondrial1.1.2.30.505
2du2FMNLactate oxidase/0.504
1h50FMNPentaerythritol tetranitrate reductase/0.493
1szgFNSCytochrome b2, mitochondrial1.1.2.30.493
1fcbFMNCytochrome b2, mitochondrial1.1.2.30.490
1icpFMN12-oxophytodienoate reductase 11.3.1.420.487
1szfFMNCytochrome b2, mitochondrial1.1.2.30.485
3f03FMNPentaerythritol tetranitrate reductase/0.485
4tmbFMNOld yellow enzyme/0.480
1icsFMN12-oxophytodienoate reductase 11.3.1.420.476
1z48FMNNADPH dehydrogenase/0.475
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.475
3p84FMNPentaerythritol tetranitrate reductase/0.474
1qcwFNSCytochrome b2, mitochondrial1.1.2.30.472
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.471
1icqFMN12-oxophytodienoate reductase 11.3.1.420.469
4utlFNRXenobiotic reductase/0.469
3n19FNRXenobiotic reductase/0.466
3p82FMNPentaerythritol tetranitrate reductase/0.465
3p8jFMNPentaerythritol tetranitrate reductase/0.465
1h63FMNPentaerythritol tetranitrate reductase/0.464
4rnuFMNNADPH dehydrogenase 11.6.99.10.463
2abbFMNPentaerythritol tetranitrate reductase/0.462
2oz0FMNCytochrome b2, mitochondrial1.1.2.30.461
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.459
4awtFMNNADH:flavin oxidoreductase Sye1/0.459
3l5lFMNXenobiotic reductase/0.458
4utkFNRXenobiotic reductase/0.454
2gqaFMNNADH:flavin oxidoreductase Sye1/0.453
1qlhNADAlcohol dehydrogenase E chain1.1.1.10.452
1vyrFMNPentaerythritol tetranitrate reductase/0.452
3p62FMNPentaerythritol tetranitrate reductase/0.452
3p74FMNPentaerythritol tetranitrate reductase/0.452
2gouFMNNADH:flavin oxidoreductase Sye1/0.450
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
1bwlFMNNADPH dehydrogenase 11.6.99.10.447
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.446
4m5pFMNNADPH dehydrogenase/0.445
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1lm1FMNFerredoxin-dependent glutamate synthase 21.4.7.10.444
3zbsOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.444
1bwkFMNNADPH dehydrogenase 11.6.99.10.443
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.443
4rnxFMNNADPH dehydrogenase 11.6.99.10.442