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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2j09FADDeoxyribodipyrimidine photo-lyase4.1.99.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2j09FADDeoxyribodipyrimidine photo-lyase4.1.99.31.000
2j07FADDeoxyribodipyrimidine photo-lyase4.1.99.30.873
2j08FADDeoxyribodipyrimidine photo-lyase4.1.99.30.637
1iqrFADDeoxyribodipyrimidine photo-lyase4.1.99.30.595
2vtbFADCryptochrome DASH, chloroplastic/mitochondrial/0.537
1owlFADDeoxyribodipyrimidine photo-lyase4.1.99.30.535
1tezFADDeoxyribodipyrimidine photo-lyase4.1.99.30.521
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.517
1np7FADCryptochrome DASH/0.517
1ownFADDeoxyribodipyrimidine photo-lyase4.1.99.30.511
1owmFADDeoxyribodipyrimidine photo-lyase4.1.99.30.510
2j4dFADCryptochrome DASH, chloroplastic/mitochondrial/0.506
1qnfFADDeoxyribodipyrimidine photo-lyase4.1.99.30.487
1u3dFADCryptochrome-1/0.474
1owpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.459
2ijgFADCryptochrome DASH, chloroplastic/mitochondrial/0.454
2wq6FADRE11660p/0.452
1u3cFADCryptochrome-1/0.447
4djaFAD(6-4) photolyase/0.445
1owoFADDeoxyribodipyrimidine photo-lyase4.1.99.30.441