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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2iw1U2FLipopolysaccharide core biosynthesis protein RfaG2.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2iw1U2FLipopolysaccharide core biosynthesis protein RfaG2.41.000
4xsrUPGAlr3699 protein/0.469
5kjfNAJAlcohol dehydrogenase E chain1.1.1.10.455
4nfsNAJAlcohol dehydrogenase E chain1.1.1.10.449
5kczNAJAlcohol dehydrogenase E chain1.1.1.10.449
3gegNADShort-chain dehydrogenase/reductase SDR/0.445
5kjcNAJAlcohol dehydrogenase E chain1.1.1.10.445
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.444
3uwqU5POrotidine 5'-phosphate decarboxylase/0.442
4cojCTPUncharacterized protein/0.441
5kwvANPPantothenate synthetase/0.441
1oonFMNOxygen-insensitive NAD(P)H nitroreductase/0.440
3qw4U5POrotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative/0.440