scPDB - Distribution of Binding site Similarity values of 2h42 entry / Site 2

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2h42	VIA	cGMP-specific 3',5'-cyclic phosphodiesterase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2h42	VIA	cGMP-specific 3',5'-cyclic phosphodiesterase	/	1.000
1udt	VIA	cGMP-specific 3',5'-cyclic phosphodiesterase	/	0.521
1uho	VDN	cGMP-specific 3',5'-cyclic phosphodiesterase	/	0.484
4jib	1L6	cGMP-dependent 3',5'-cyclic phosphodiesterase	3.1.4.17	0.441