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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2gr1FADFerredoxin reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2gr1FADFerredoxin reductase/1.000
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/0.744
2gqwFADFerredoxin reductase/0.730
2gr0FADFerredoxin reductase/0.654
4h4tFADBiphenyl dioxygenase ferredoxin reductase subunit/0.618
4h4sFADBiphenyl dioxygenase ferredoxin reductase subunit/0.617
4h4rFADBiphenyl dioxygenase ferredoxin reductase subunit/0.612
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit/0.606
2gr3FADFerredoxin reductase/0.578
4h4uFADBiphenyl dioxygenase ferredoxin reductase subunit/0.572
4h50FADBiphenyl dioxygenase ferredoxin reductase subunit/0.571
4h4qFADBiphenyl dioxygenase ferredoxin reductase subunit/0.569
1d7yFADFerredoxin reductase/0.552
4h4wFADBiphenyl dioxygenase ferredoxin reductase subunit/0.550
1m6iFADApoptosis-inducing factor 1, mitochondrial1.1.10.485
4h4yFADBiphenyl dioxygenase ferredoxin reductase subunit/0.480
3ef6FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.473
5fs7FADApoptosis-inducing factor 1, mitochondrial1.1.10.473
1v59FADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.461
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.459
3gd3FADApoptosis-inducing factor 1, mitochondrial1.1.10.455
2f5zFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.452
3kljFADNADH-rubredoxin oxidoreductase1.18.1.10.449
3cgbFADCoenzyme A disulfide reductase/0.447
5fs9FADApoptosis-inducing factor 1, mitochondrial1.1.10.442
4eqwFADCoenzyme A disulfide reductase/0.441
3icrFADCoenzyme A disulfide reductase/0.440