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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2giqNN2Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2giqNN2Genome polyprotein2.7.7.481.000
3u4r08FGenome polyprotein2.7.7.480.635
3tyvHI3Genome polyprotein2.7.7.480.618
3g86T18Genome polyprotein2.7.7.480.605
3bsc2PDGenome polyprotein2.7.7.480.600
4mk928RGenome polyprotein2.7.7.480.593
4mka2AYGenome polyprotein2.7.7.480.579
3d5m4MSGenome polyprotein2.7.7.480.576
3d28B34Genome polyprotein2.7.7.480.571
3gynB42Genome polyprotein2.7.7.480.557
3igvB80Genome polyprotein2.7.7.480.550
3hkyIX6Genome polyprotein2.7.7.480.546
3br9DEYGenome polyprotein2.7.7.480.545
3uph0C1Genome polyprotein2.7.7.480.537
3csoXNIGenome polyprotein2.7.7.480.535
3hkwIX6Genome polyprotein2.7.7.480.530
3h59H59Genome polyprotein2.7.7.480.527
4mkb28VGenome polyprotein2.7.7.480.527
3u4o08EGenome polyprotein2.7.7.480.513
3h2lYAKGenome polyprotein2.7.7.480.512
2gc8885Polyprotein/0.504
3ska053Genome polyprotein2.7.7.480.472
4eaw0NQGenome polyprotein2.7.7.480.468
2yoj8Y6Genome polyprotein2.7.7.480.463
3gnvXNZGenome polyprotein2.7.7.480.455