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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2gewFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2gewFADCholesterol oxidase1.1.3.61.000
3b6dFAECholesterol oxidase1.1.3.60.673
1b4vFADCholesterol oxidase1.1.3.60.660
1cboFADCholesterol oxidase1.1.3.60.655
1n4vFADCholesterol oxidase1.1.3.60.651
1n1pFADCholesterol oxidase1.1.3.60.648
4xwrFADCholesterol oxidase1.1.3.60.648
3cnjFADCholesterol oxidase1.1.3.60.647
4u2tFADCholesterol oxidase1.1.3.60.643
1n4wFADCholesterol oxidase1.1.3.60.640
1ijhFADCholesterol oxidase1.1.3.60.637
4rekFADCholesterol oxidase1.1.3.60.633
3gyjFADCholesterol oxidase1.1.3.60.630
3gyiFADCholesterol oxidase1.1.3.60.615
3coxFADCholesterol oxidase1.1.3.60.542
1b8sFADCholesterol oxidase1.1.3.60.513
3s5wFADL-ornithine N(5)-monooxygenase/0.479
3lshFADPyranose 2-oxidase/0.461
2gv8FADThiol-specific monooxygenase1.14.130.453
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.453
4rpgFADUDP-galactopyranose mutase5.4.99.90.447
4udrFAD5-(hydroxymethyl)furfural oxidase/0.445
4b67FADL-ornithine N(5)-monooxygenase/0.444
2bryFAD[F-actin]-methionine sulfoxide oxidase MICAL11.14.130.443
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.443
4tm4FDAKtzI/0.443
4xxgFADCholesterol oxidase1.1.3.60.443
2bi7FADUDP-galactopyranose mutase5.4.99.90.441