scPDB - Distribution of Binding site Similarity values of 2ddo entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2ddo	ATP	Pyridoxine/pyridoxal/pyridoxamine kinase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2ddo	ATP	Pyridoxine/pyridoxal/pyridoxamine kinase	/	1.000
3keu	ATP	Pyridoxal kinase	2.7.1.35	0.492
1rfv	ADP	Pyridoxal kinase	2.7.1.35	0.478
4c7k	NAP	Corticosteroid 11-beta-dehydrogenase isozyme 1	1.1.1.146	0.476
3ibq	ATP	Pyridoxal kinase	/	0.473
3drc	MTX	Dihydrofolate reductase	1.5.1.3	0.471
2chx	090	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.470
2y60	M8F	Isopenicillin N synthase	1.21.3.1	0.469
1qjf	ACS	Isopenicillin N synthase	1.21.3.1	0.468
2jb4	A14	Isopenicillin N synthase	1.21.3.1	0.468
2vbd	V10	Isopenicillin N synthase	1.21.3.1	0.464
3fhy	ATP	Pyridoxal kinase	2.7.1.35	0.463
1xdd	AAY	Integrin alpha-L	/	0.462
2bu9	HFV	Isopenicillin N synthase	1.21.3.1	0.462
1qiq	ACC	Isopenicillin N synthase	1.21.3.1	0.461
2zba	ZBA	Trichothecene 3-O-acetyltransferase	/	0.461
3lqf	NAD	Galactitol dehydrogenase	/	0.461
2y6f	M9F	Isopenicillin N synthase	1.21.3.1	0.456
3zoi	M2W	Isopenicillin N synthase	1.21.3.1	0.455
1xe5	5FE	Plasmepsin-2	3.4.23.39	0.454
2vbp	VB1	Isopenicillin N synthase	1.21.3.1	0.453
1oc1	ASV	Isopenicillin N synthase	1.21.3.1	0.452
3tk3	CPZ	Cytochrome P450 2B4	1.14.14.1	0.452
1rfu	ADP	Pyridoxal kinase	2.7.1.35	0.451
1rne	C60	Renin	3.4.23.15	0.450
4cvm	ANP	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	/	0.450
4f4d	CHD	Ferrochelatase, mitochondrial	4.99.1.1	0.450
2y0m	ACO	Histone acetyltransferase KAT8	/	0.449
4bb3	KKA	Isopenicillin N synthase	1.21.3.1	0.449
4nbt	NAD	3-oxoacyl-[acyl-carrier-protein] reductase	/	0.449
2fr0	NDP	6-deoxyerythronolide-B synthase EryA1, modules 1 and 2	/	0.448
2ivi	ACW	Isopenicillin N synthase	1.21.3.1	0.448
4j0v	1H7	Beta-secretase 1	3.4.23.46	0.447
2ktd	PUC	Prostaglandin-H2 D-isomerase	5.3.99.2	0.446
4bge	PYW	Enoyl-[acyl-carrier-protein] reductase [NADH]	1.3.1.9	0.446
1hb1	OCV	Isopenicillin N synthase	1.21.3.1	0.445
2bxo	OPB	Serum albumin	/	0.445
2cf6	NAP	Cinnamyl alcohol dehydrogenase 5	1.1.1.195	0.445
1bk0	ACV	Isopenicillin N synthase	1.21.3.1	0.444
1obn	ASV	Isopenicillin N synthase	1.21.3.1	0.444
4nbw	NAD	Short-chain dehydrogenase/reductase SDR	/	0.443
1bvr	NAD	Enoyl-[acyl-carrier-protein] reductase [NADH]	1.3.1.9	0.442
1hb3	SCV	Isopenicillin N synthase	1.21.3.1	0.442
3kpk	FAD	Sulfide-quinone reductase	/	0.442
4gj3	0XP	Non-receptor tyrosine-protein kinase TYK2	2.7.10.2	0.442
1uzw	CDH	Isopenicillin N synthase	1.21.3.1	0.441
2lfo	GCH	Fatty acid-binding protein, liver	/	0.441
3c15	FOK	Adenylate cyclase type 2	/	0.441
3c15	FOK	Adenylate cyclase type 5	/	0.441
3c3x	NAP	Eugenol synthase 1	1.1.1.318	0.441
4eag	ATP	5'-AMP-activated protein kinase subunit gamma-1	/	0.441
4fw8	NAI	3-oxoacyl-(Acyl-carrier-protein) reductase	/	0.441
4jlm	1NN	Deoxycytidine kinase	2.7.1.74	0.441
3bts	NAD	Galactose/lactose metabolism regulatory protein GAL80	/	0.440