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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2cduFADNADH oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2cduFADNADH oxidase/1.000
1f8wFADNADH peroxidase1.11.1.10.494
3lb8FADPutidaredoxin reductase1.18.1.50.490
1nhpFADNADH peroxidase1.11.1.10.468
1nhrFADNADH peroxidase1.11.1.10.463
3cgcFADCoenzyme A disulfide reductase/0.461
4m52FADDihydrolipoyl dehydrogenase1.8.1.40.460
1nhqFADNADH peroxidase1.11.1.10.459
1npxFADNADH peroxidase1.11.1.10.444
1joaFADNADH peroxidase1.11.1.10.443
3kpkFADSulfide-quinone reductase/0.443
2f5zFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.441
1nhsFADNADH peroxidase1.11.1.10.440