scPDB - Distribution of Binding site Similarity values of 2c9d entry / Site 8

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2c9d	PHR	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2c9d	PHR	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	1.000
2c94	TSF	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.470
1w29	TS1	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.468
2vi5	Y19	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.463
1w19	T4P	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.457
1w29	TS0	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.442