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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2bhwLUXChlorophyll a-b binding protein AB80, chloroplastic

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2bhwLUXChlorophyll a-b binding protein AB80, chloroplastic/1.000
2o98FSC14-3-3-like protein C/0.488
4fgcPQ0NADPH-dependent 7-cyano-7-deazaguanine reductase1.7.1.130.478
5hvnNAD3-dehydroquinate synthase/0.472
3ioeA7DPantothenate synthetase6.3.2.10.471
3l9lL9LcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
2j62GSZO-GlcNAcase NagJ/0.457
4hs4FMNChromate reductase/0.455
5kwvANPPantothenate synthetase/0.453
3iocA5DPantothenate synthetase6.3.2.10.452
2x3fAPCPantothenate synthetase/0.450
1kwsUGAGalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3/0.449
5ahkFADAcetolactate synthase II, large subunit/0.449
1gky5GPGuanylate kinase2.7.4.80.448
1m1dLYXHAT A1/0.447
4e31JHZMethyltransferase/0.447
4yx6FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD/0.447
2jk6FADTrypanothione reductase/0.442
3eanFADThioredoxin reductase 1, cytoplasmic1.8.1.90.441
3roxTEPNAD(P)H-hydrate epimerase5.1.99.60.441
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.441
3h03UBPGlutamate receptor 2/0.440