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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1zgyBRLPeroxisome proliferator-activated receptor gamma

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1zgyBRLPeroxisome proliferator-activated receptor gamma/1.000
1fm6BRLPeroxisome proliferator-activated receptor gamma/0.602
2gtk208Peroxisome proliferator-activated receptor gamma/0.595
4xldBRLPeroxisome proliferator-activated receptor gamma/0.585
1fm9570Peroxisome proliferator-activated receptor gamma/0.580
3vspEK8Peroxisome proliferator-activated receptor gamma/0.574
2znoS44Peroxisome proliferator-activated receptor gamma/0.573
2q8sL92Peroxisome proliferator-activated receptor gamma/0.568
2pobGW4Peroxisome proliferator-activated receptor gamma/0.563
2ath3EAPeroxisome proliferator-activated receptor gamma/0.556
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.554
3vsoEK1Peroxisome proliferator-activated receptor gamma/0.549
2hwrDRDPeroxisome proliferator-activated receptor gamma/0.541
1knuYPAPeroxisome proliferator-activated receptor gamma/0.540
3vjhJ35Peroxisome proliferator-activated receptor gamma/0.540
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.539
1rdt570Peroxisome proliferator-activated receptor gamma/0.538
1k74544Peroxisome proliferator-activated receptor gamma/0.529
3v9y24LPeroxisome proliferator-activated receptor gamma/0.523
4emaBRLPeroxisome proliferator-activated receptor gamma/0.521
4hee14RPeroxisome proliferator-activated receptor gamma/0.508
2q5p241Peroxisome proliferator-activated receptor gamma/0.505
2npaMMBPeroxisome proliferator-activated receptor alpha/0.504
2znnS44Peroxisome proliferator-activated receptor alpha/0.502
4f9mFCMPeroxisome proliferator-activated receptor gamma/0.500
3v9v21LPeroxisome proliferator-activated receptor gamma/0.499
3sp6IL2Peroxisome proliferator-activated receptor alpha/0.498
4o8fBRLPeroxisome proliferator-activated receptor gamma/0.496
2hfpNSIPeroxisome proliferator-activated receptor gamma/0.493
1i7gAZ2Peroxisome proliferator-activated receptor alpha/0.490
1nyxDRFPeroxisome proliferator-activated receptor gamma/0.488
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.488
2znpK55Peroxisome proliferator-activated receptor delta/0.480
1k7l544Peroxisome proliferator-activated receptor alpha/0.479
1kkq471Peroxisome proliferator-activated receptor alpha/0.478
2znq401Peroxisome proliferator-activated receptor delta/0.474
2p4yC03Peroxisome proliferator-activated receptor gamma/0.473
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.469
3gbk2PQPeroxisome proliferator-activated receptor gamma/0.468
2q61SF1Peroxisome proliferator-activated receptor gamma/0.467
2om9AJAPeroxisome proliferator-activated receptor gamma/0.466
3sp9IL2Peroxisome proliferator-activated receptor delta/0.465
3kduNKSPeroxisome proliferator-activated receptor alpha/0.463
3cs8BRLPeroxisome proliferator-activated receptor gamma/0.459
4a4wYFBPeroxisome proliferator-activated receptor gamma/0.458
2q59240Peroxisome proliferator-activated receptor gamma/0.442
2rewREWPeroxisome proliferator-activated receptor alpha/0.442