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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1vhnFMNtRNA-dihydrouridine synthase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1vhnFMNtRNA-dihydrouridine synthase/1.000
4ycoFMNtRNA-dihydrouridine(16) synthase/0.525
3p84FMNPentaerythritol tetranitrate reductase/0.479
2rdn1PL1-deoxypentalenic acid 11-beta-hydroxylase1.14.11.350.477
3p8jFMNPentaerythritol tetranitrate reductase/0.472
4bf9FMNtRNA-dihydrouridine(16) synthase/0.471
1vyrFMNPentaerythritol tetranitrate reductase/0.467
3f03FMNPentaerythritol tetranitrate reductase/0.465
2nnqT4BFatty acid-binding protein, adipocyte/0.463
1bwlFMNNADPH dehydrogenase 11.6.99.10.462
1h50FMNPentaerythritol tetranitrate reductase/0.461
1wp4NDP3-hydroxyisobutyrate dehydrogenase/0.459
1h63FMNPentaerythritol tetranitrate reductase/0.455
1icsFMN12-oxophytodienoate reductase 11.3.1.420.452
3fr28CAFatty acid-binding protein, adipocyte/0.452
2bjsACVIsopenicillin N synthase1.21.3.10.451
3p62FMNPentaerythritol tetranitrate reductase/0.449
2abbFMNPentaerythritol tetranitrate reductase/0.445
3fr5I4AFatty acid-binding protein, adipocyte/0.445
4z87GDPInosine-5'-monophosphate dehydrogenase/0.445
1r6uTYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.444
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.443
3gr8FMNNADPH dehydrogenase/0.443
1touB1VFatty acid-binding protein, adipocyte/0.442
3p8iFMNPentaerythritol tetranitrate reductase/0.442
1dr4HBIDihydrofolate reductase1.5.1.30.441
1u1gBBBUridine phosphorylase2.4.2.30.441
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.441
3rbaCODPhosphopantetheine adenylyltransferase/0.441
1vbiNADMalate/L-lactate dehydrogenase family protein/0.440
2ourCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.440
3b05FNRIsopentenyl-diphosphate delta-isomerase/0.440
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.440
3otwCOAPhosphopantetheine adenylyltransferase/0.440