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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1u31NDPNAD(P) transhydrogenase, mitochondrial1.6.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1u31NDPNAD(P) transhydrogenase, mitochondrial1.6.1.21.000
1pt9TAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.773
1djlNAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.640
1d4oNAPNAD(P) transhydrogenase, mitochondrial/0.617
1pnoNAPNAD(P) transhydrogenase subunit beta1.6.1.20.564
2fr8NAPNAD(P) transhydrogenase subunit beta1.6.1.20.522
2fsvNAPNAD(P) transhydrogenase subunit beta1.6.1.20.517
1nm5NAPNAD(P) transhydrogenase subunit beta1.6.1.20.497
4j1tNAPNAD(P) transhydrogenase subunit beta/0.479