scPDB - Distribution of Binding site Similarity values of 1tu3 entry / Site 5

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1tu3	GNP	Ras-related protein Rab-5A

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1tu3	GNP	Ras-related protein Rab-5A	/	1.000
3mjh	GTP	Ras-related protein Rab-5A	/	0.512
4uj5	GNP	Ras-related protein Rab-11A	/	0.466
4uj3	GNP	Ras-related protein Rab-11A	/	0.462
2ic5	GDP	Ras-related C3 botulinum toxin substrate 3	/	0.454
1n6l	GTP	Ras-related protein Rab-5A	/	0.453
3wyg	GTP	GTP-binding nuclear protein GSP1/CNR1	/	0.452
4ol0	GTP	GTP-binding nuclear protein Ran	/	0.450
4hdq	GNP	Ras-related protein Rap-1b	/	0.442
3w3z	GTP	GTP-binding nuclear protein Ran	/	0.441
4d0l	GSP	Ras-related protein Rab-11A	/	0.441
3t1t	GDP	Probable gliding protein mglA	/	0.440