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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1szgFNSCytochrome b2, mitochondrial1.1.2.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1szgFNSCytochrome b2, mitochondrial1.1.2.31.000
1szfFMNCytochrome b2, mitochondrial1.1.2.30.587
1fcbFMNCytochrome b2, mitochondrial1.1.2.30.546
1kbjFMNCytochrome b2, mitochondrial1.1.2.30.520
1kbiFMNCytochrome b2, mitochondrial1.1.2.30.516
1qcwFNSCytochrome b2, mitochondrial1.1.2.30.510
3giyFMN(S)-mandelate dehydrogenase1.1.99.310.473
2nliFMNLactate oxidase/0.465
2oz0FMNCytochrome b2, mitochondrial1.1.2.30.463
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.463
1goxFMNPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.460
3b70NAPEnoyl reductase LovC10.458
4eb7PLPCysteine desulfurase IscS 2/0.453
2g226IGRenin3.4.23.150.451
2j6xFMNLactate oxidase/0.449
2a92NAIL-lactate dehydrogenase/0.445
1tehNADAlcohol dehydrogenase class-31.1.1.10.444
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.444
1me6IVSPlasmepsin-23.4.23.390.441
1x1aSAMC-20 methyltransferase/0.441
2e77FMNLactate oxidase/0.441
3q43D66M1 family aminopeptidase3.4.110.441
1lbcCYZGlutamate receptor 2/0.440
2g1o2IGRenin3.4.23.150.440
2iko7IGRenin3.4.23.150.440