Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ryiFADGlycine oxidase1.4.3.19

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ryiFADGlycine oxidase1.4.3.191.000
1ng3FADGlycine oxidase1.4.3.190.585
1ng4FADGlycine oxidase1.4.3.190.579
3if9FADGlycine oxidase1.4.3.190.558
2du8FADD-amino-acid oxidase1.4.3.30.540
2e48FADD-amino-acid oxidase1.4.3.30.508
1kifFADD-amino-acid oxidase1.4.3.30.504
4yshFADGlycine oxidase/0.498
2rgoFADAlpha-Glycerophosphate Oxidase/0.469
3znpFADD-amino-acid oxidase1.4.3.30.459
3axbFADPutative oxidoreductase/0.457
3vqrFADPutative oxidoreductase/0.447
3sglFADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC/0.444
2ba9FADPutative aminooxidase/0.442