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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1rydNDPGlucose--fructose oxidoreductase1.1.99.28

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1rydNDPGlucose--fructose oxidoreductase1.1.99.281.000
1h6cNDPGlucose--fructose oxidoreductase1.1.99.280.637
1h6aNDPGlucose--fructose oxidoreductase1.1.99.280.594
1h6dNDPGlucose--fructose oxidoreductase1.1.99.280.593
1h6bNDPGlucose--fructose oxidoreductase1.1.99.280.585
1ryeNDPGlucose--fructose oxidoreductase1.1.99.280.581
5a04NDPGlucose-fructose oxidoreductase/0.579
1ofgNDPGlucose--fructose oxidoreductase1.1.99.280.573
5a02NAPGlucose-fructose oxidoreductase/0.565
5a03NDPGlucose-fructose oxidoreductase/0.555
5a05NDPGlucose-fructose oxidoreductase/0.550
5a06NDPGlucose-fructose oxidoreductase/0.533
1evjNADGlucose--fructose oxidoreductase1.1.99.280.526
1zh8NAPUncharacterized protein/0.471