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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1rdwLARActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1rdwLARActin, alpha skeletal muscle/1.000
4b1uLABActin, alpha skeletal muscle/0.581
4b1vLABActin, alpha skeletal muscle/0.580
2q0uLABActin, alpha skeletal muscle/0.559
4h0yLARActin, alpha skeletal muscle/0.557
2v51LABActin, alpha skeletal muscle/0.554
3sjhLARActin, alpha skeletal muscle/0.549
1esvLARActin, alpha skeletal muscle/0.529
4h03LARActin, alpha skeletal muscle/0.524
1ijjLARActin, alpha skeletal muscle/0.521
1sqkLARActin, alpha skeletal muscle/0.513
3buzLARActin, alpha skeletal muscle/0.509
2v52LABActin, alpha skeletal muscle/0.475
1rfqLARActin, alpha skeletal muscle/0.465
4h0tLARActin, alpha skeletal muscle/0.460
4gy2LARActin, alpha skeletal muscle/0.456
1u3cFADCryptochrome-1/0.448