scPDB - Distribution of Binding site Similarity values of 1nqv entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1nqv	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1nqv	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	1.000
1nqu	RDL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.622
4kq6	DLZ	6,7-dimethyl-8-ribityllumazine synthase	/	0.544
1rvv	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.538
1kyx	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.502
1kyv	RBF	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.501
1ejb	INJ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.498
2c9d	PHR	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.489
2a57	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.488
2a59	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.484
1zis	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.481
1nqw	5YL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.469
1w19	T4P	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.464
1w29	TS1	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.460
2c9b	PUG	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.458
2a58	RBF	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.455
1kyy	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.451