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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1nmkSFMPeptidyl-prolyl cis-trans isomerase A5.2.1.8

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1nmkSFMPeptidyl-prolyl cis-trans isomerase A5.2.1.81.000
2c1zU2FAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.457
1fapRAPPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.456
1fapRAPSerine/threonine-protein kinase mTOR2.7.11.10.456
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.451
4b1c1B1Beta-secretase 13.4.23.460.448
2g263LGRenin3.4.23.150.445
3fapARDPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.444
3fapARDSerine/threonine-protein kinase mTOR2.7.11.10.444
1q23FUAChloramphenicol acetyltransferase2.3.1.280.442
2ktdPUCProstaglandin-H2 D-isomerase5.3.99.20.440
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.440