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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ng4FADGlycine oxidase1.4.3.19

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ng4FADGlycine oxidase1.4.3.191.000
1ryiFADGlycine oxidase1.4.3.190.600
1ng3FADGlycine oxidase1.4.3.190.581
3if9FADGlycine oxidase1.4.3.190.562
2du8FADD-amino-acid oxidase1.4.3.30.487
1kifFADD-amino-acid oxidase1.4.3.30.470
4yshFADGlycine oxidase/0.457
2e48FADD-amino-acid oxidase1.4.3.30.452
3sglFADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC/0.445
3vqrFADPutative oxidoreductase/0.444