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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1n4wFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1n4wFADCholesterol oxidase1.1.3.61.000
1n1pFADCholesterol oxidase1.1.3.60.911
4rekFADCholesterol oxidase1.1.3.60.903
4xxgFADCholesterol oxidase1.1.3.60.884
3b6dFAECholesterol oxidase1.1.3.60.866
3gyiFADCholesterol oxidase1.1.3.60.855
4xwrFADCholesterol oxidase1.1.3.60.842
3gyjFADCholesterol oxidase1.1.3.60.836
1b8sFADCholesterol oxidase1.1.3.60.834
1ijhFADCholesterol oxidase1.1.3.60.830
1n4vFADCholesterol oxidase1.1.3.60.755
1b4vFADCholesterol oxidase1.1.3.60.741
4u2tFADCholesterol oxidase1.1.3.60.689
3cnjFADCholesterol oxidase1.1.3.60.686
1cboFADCholesterol oxidase1.1.3.60.674
2gewFADCholesterol oxidase1.1.3.60.669
3coxFADCholesterol oxidase1.1.3.60.567
3lshFADPyranose 2-oxidase/0.495
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.469
4yntFDAGlucose oxidase, putative/0.466
2ylzFADPhenylacetone monooxygenase1.14.13.920.462
5hsaFASAlcohol oxidase 11.1.3.130.462
4rpgFADUDP-galactopyranose mutase5.4.99.90.456
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.450
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.448
1zemNADXylitol dehydrogenase/0.445
2c3qGTXGlutathione S-transferase theta-12.5.1.180.445
4udqFAD5-(hydroxymethyl)furfural oxidase/0.445
3qvpFADGlucose oxidase1.1.3.40.443
3fpzAHZThiamine thiazole synthase/0.441
4tm4FDAKtzI/0.441