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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1mj3HXCEnoyl-CoA hydratase, mitochondrial4.2.1.17

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1mj3HXCEnoyl-CoA hydratase, mitochondrial4.2.1.171.000
1ey3DAKEnoyl-CoA hydratase, mitochondrial4.2.1.170.594
1dubCAAEnoyl-CoA hydratase, mitochondrial4.2.1.170.555
1nzyBCA4-chlorobenzoyl coenzyme A dehalogenase3.8.1.70.508
3q0gBCOProbable enoyl-CoA hydratase echA84.2.1.170.508
2dubCO8Enoyl-CoA hydratase, mitochondrial4.2.1.170.504
4qij1HA1,4-dihydroxy-2-naphthoyl-CoA synthase/0.504
1jxzBCA4-chlorobenzoyl coenzyme A dehalogenase3.8.1.70.488
5aajHSCPeroxisomal bifunctional enzyme1.1.1.350.476
4i421HA1,4-dihydroxy-2-naphthoyl-CoA synthase/0.473
4qii2NE1,4-dihydroxy-2-naphthoyl-CoA synthase/0.471
4i4z2NE1,4-dihydroxy-2-naphthoyl-CoA synthase/0.464
3t88S0N1,4-dihydroxy-2-naphthoyl-CoA synthase/0.449