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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1jtkTHUCytidine deaminase3.5.4.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1jtkTHUCytidine deaminase3.5.4.51.000
1uwzTHUCytidine deaminase3.5.4.50.820
1ux0THUCytidine deaminase3.5.4.50.622
4ugaQ05Nitric oxide synthase oxygenase1.14.13.1650.473
1m9m6NINitric oxide synthase, endothelial1.14.13.390.463
4gqe6KJNitric oxide synthase, brain1.14.13.390.463
2yj5ATPCopper-transporting ATPase/0.458
4fw05KJNitric oxide synthase, brain1.14.13.390.456
3dqrJI2Nitric oxide synthase, brain1.14.13.390.454
3eah327Nitric oxide synthase, endothelial1.14.13.390.453
3pm1ETHTH-type transcriptional regulator QacR/0.453
4jshQ15Nitric oxide synthase, brain1.14.13.390.453
4ug91EWNitric oxide synthase oxygenase1.14.13.1650.452
3nlw3XFNitric oxide synthase, brain1.14.13.390.450
1m9k7NINitric oxide synthase, endothelial1.14.13.390.448
3jwuJ11Nitric oxide synthase, brain1.14.13.390.447
3tylAXWNitric oxide synthase, brain1.14.13.390.447
1m8h6NINitric oxide synthase, inducible1.14.13.390.446
3jx0JI4Nitric oxide synthase, brain1.14.13.390.446
4ug71EVNitric oxide synthase oxygenase1.14.13.1650.446
4jsjQJ7Nitric oxide synthase, brain1.14.13.390.444
4ug5XFKNitric oxide synthase oxygenase1.14.13.1650.444
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.443
4esoNAPPutative oxidoreductase/0.443
4lwbQJ8Nitric oxide synthase oxygenase1.14.13.1650.443
1nhz486Glucocorticoid receptor/0.442
3n5vXFHNitric oxide synthase, brain1.14.13.390.442
4lwaQ13Nitric oxide synthase oxygenase1.14.13.1650.442