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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1jf2CZHObelin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1jf2CZHObelin/1.000
4n1fCZHObelin/0.631
1el4CTZObelin/0.625
1uhjCZBAequorin-2/0.624
1uhhCZPAequorin-2/0.611
4nqgCZHMitrocomin/0.607
1jf0CZHObelin/0.601
1qv0CZHObelin/0.597
1s36CEIObelin/0.595
1ej3CZHAequorin-2/0.592
4mrxCZHObelin/0.590
1qv1CZHObelin/0.567
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.467
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.465
3pm1ETHTH-type transcriptional regulator QacR/0.461
2f3815MAldo-keto reductase family 1 member C3/0.459
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.457
3br3ETHTH-type transcriptional regulator QacR/0.456
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.456
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.455
5cc9DDFDihydrofolate reductase1.5.1.30.454
2pnjCHDFerrochelatase, mitochondrial4.99.1.10.452
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.452
3pqbVGPPutative oxidoreductase/0.449
2rqfJH3Hemolymph juvenile hormone binding protein/0.448
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.448
1ry0PG2Aldo-keto reductase family 1 member C3/0.447
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.446
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.445
3uzcT4EAdenosine receptor A2a/0.445
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.442
1p8dCO1Oxysterols receptor LXR-beta/0.441
2j3qTFLAcetylcholinesterase3.1.1.70.441
3h3t16HCollagen type IV alpha-3-binding protein/0.441
4iah1DXAlr2278 protein/0.441
2po7CHDFerrochelatase, mitochondrial4.99.1.10.440