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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1hckATPCyclin-dependent kinase 22.7.11.22

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1hckATPCyclin-dependent kinase 22.7.11.221.000
1b38ATPCyclin-dependent kinase 22.7.11.220.582
1b39ATPCyclin-dependent kinase 22.7.11.220.530
2c5yMTWCyclin-dependent kinase 22.7.11.220.515
2a4lRRCCyclin-dependent kinase 22.7.11.220.496
2b52D42Cyclin-dependent kinase 22.7.11.220.491
3lfnA27Cyclin-dependent kinase 22.7.11.220.491
2xmyCDKCyclin-dependent kinase 22.7.11.220.490
1y91CT9Cyclin-dependent kinase 22.7.11.220.487
3r83Z14Cyclin-dependent kinase 22.7.11.220.483
3lfqA28Cyclin-dependent kinase 22.7.11.220.481
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.479
3rpo24ZCyclin-dependent kinase 22.7.11.220.478
2c6o4SPCyclin-dependent kinase 22.7.11.220.471
3r7yZ04Cyclin-dependent kinase 22.7.11.220.471
4erwSTUCyclin-dependent kinase 22.7.11.220.471
4fl2ANPTyrosine-protein kinase SYK2.7.10.20.469
2r64740Cyclin-dependent kinase 22.7.11.220.468
3s1h56ZCyclin-dependent kinase 22.7.11.220.468
2r3jSCJCyclin-dependent kinase 22.7.11.220.467
3r8lZ30Cyclin-dependent kinase 22.7.11.220.467
4fkv61KCyclin-dependent kinase 22.7.11.220.467
3nieANPMitogen-activated protein kinase/0.466
3plsANPMacrophage-stimulating protein receptor2.7.10.10.466
1h1r6CPCyclin-dependent kinase 22.7.11.220.462
1w8cN69Cyclin-dependent kinase 22.7.11.220.462
3lmgANPReceptor tyrosine-protein kinase erbB-32.7.10.10.462
1pxlCK4Cyclin-dependent kinase 22.7.11.220.460
2exmZIPCyclin-dependent kinase 22.7.11.220.460
5cnoANPEpidermal growth factor receptor2.7.10.10.458
1oitHDTCyclin-dependent kinase 22.7.11.220.453
3qtxX43Cyclin-dependent kinase 22.7.11.220.453
4oh4ANPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.453
1qmzATPCyclin-dependent kinase 22.7.11.220.452
5cnnANPEpidermal growth factor receptor2.7.10.10.452
1g5sI17Cyclin-dependent kinase 22.7.11.220.451
4lyn1YGCyclin-dependent kinase 22.7.11.220.451
1pxoCK7Cyclin-dependent kinase 22.7.11.220.450
3r8vZ62Cyclin-dependent kinase 22.7.11.220.450
4h3qANPMitogen-activated protein kinase 12.7.11.240.450
2a0cCK9Cyclin-dependent kinase 22.7.11.220.449
2duv371Cyclin-dependent kinase 22.7.11.220.448
3qx2X63Cyclin-dependent kinase 22.7.11.220.448
2vtqLZACyclin-dependent kinase 22.7.11.220.445
2y9qANPMitogen-activated protein kinase 12.7.11.240.445
4ez50RSCyclin-dependent kinase 62.7.11.220.444
1h0w207Cyclin-dependent kinase 22.7.11.220.442
2ds11CDCyclin-dependent kinase 22.7.11.220.441
1dawANPCasein kinase II subunit alpha2.7.11.10.440
1e1xNW1Cyclin-dependent kinase 22.7.11.220.440
2vthLZ2Cyclin-dependent kinase 22.7.11.220.440
3qtuX44Cyclin-dependent kinase 22.7.11.220.440
3rk708ZCyclin-dependent kinase 22.7.11.220.440
4eon1ROCyclin-dependent kinase 22.7.11.220.440