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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1eblCOA3-oxoacyl-[acyl-carrier-protein] synthase 3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1eblCOA3-oxoacyl-[acyl-carrier-protein] synthase 3/1.000
2yltNAPPhenylacetone monooxygenase1.14.13.920.462
3il5B823-oxoacyl-[acyl-carrier-protein] synthase 3/0.450
1gufNDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial1.3.1.100.448
1pnvTYDdTDP-epi-vancosaminyltransferase2.4.1.3110.448
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.448
4hwkNAPSepiapterin reductase1.1.1.1530.446
3pduNAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase/0.445
4c77N01Phenylacetone monooxygenase1.14.13.920.445
2gyoCOA3-oxoacyl-[acyl-carrier-protein] synthase 3/0.444
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.443
4d04NAPPhenylacetone monooxygenase1.14.13.920.443
4i8x6P3L-lactate dehydrogenase A chain1.1.1.270.443
2ylrNAPPhenylacetone monooxygenase1.14.13.920.441
2r26CMCCitrate synthase2.3.3.160.440