scPDB - Distribution of Binding site Similarity values of 1d0m entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1d0m	BLG	Membrane-bound lytic murein transglycosylase B	4.2.2.n1

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1d0m	BLG	Membrane-bound lytic murein transglycosylase B	4.2.2.n1	1.000
1d0l	BLG	Membrane-bound lytic murein transglycosylase B	4.2.2.n1	0.674
2c20	NAD	UDP-glucose 4-epimerase	/	0.454
4rvf	TYD	D-mycarose 3-C-methyltransferase	/	0.448
4rvg	TYD	D-mycarose 3-C-methyltransferase	/	0.447
1fxs	NAP	GDP-L-fucose synthase	/	0.445
4yxm	2BA	DNA integrity scanning protein DisA	/	0.442