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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1cboFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1cboFADCholesterol oxidase1.1.3.61.000
4u2lSFDCholesterol oxidase1.1.3.60.809
1cc2FADCholesterol oxidase1.1.3.60.737
1n4vFADCholesterol oxidase1.1.3.60.716
4xwrFADCholesterol oxidase1.1.3.60.716
1b4vFADCholesterol oxidase1.1.3.60.710
1ijhFADCholesterol oxidase1.1.3.60.708
1b8sFADCholesterol oxidase1.1.3.60.704
1mxtFAECholesterol oxidase1.1.3.60.699
4xxgFADCholesterol oxidase1.1.3.60.697
1n4uFAECholesterol oxidase1.1.3.60.664
3gyjFADCholesterol oxidase1.1.3.60.661
4rekFADCholesterol oxidase1.1.3.60.647
4u2sFDACholesterol oxidase1.1.3.60.646
3gyiFADCholesterol oxidase1.1.3.60.639
3cnjFADCholesterol oxidase1.1.3.60.585
3coxFADCholesterol oxidase1.1.3.60.547
4qi5FADCellobiose dehydrogenase/0.542
4qi4FADCellobiose dehydrogenase/0.532
4qi7FADCellobiose dehydrogenase/0.516
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.484
4mihFADPyranose 2-oxidase1.1.3.100.482
5hsaFASAlcohol oxidase 11.1.3.130.478
4udrFAD5-(hydroxymethyl)furfural oxidase/0.470
1n4wFADCholesterol oxidase1.1.3.60.465
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.464
1galFADGlucose oxidase1.1.3.40.459
1cf3FADGlucose oxidase1.1.3.40.456
4udqFAD5-(hydroxymethyl)furfural oxidase/0.455