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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ify TRH Glucose-1-phosphate thymidylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ify TRHGlucose-1-phosphate thymidylyltransferase / 1.276
1g3l TRHGlucose-1-phosphate thymidylyltransferase / 0.902
4ho9 GDUGlucose-1-phosphate thymidylyltransferase / 0.768
4ho2 THMGlucose-1-phosphate thymidylyltransferase / 0.740
1iin UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.739
4ho5 DAUGlucose-1-phosphate thymidylyltransferase / 0.726
4ho6 UPGGlucose-1-phosphate thymidylyltransferase / 0.701
4ho8 UPGGlucose-1-phosphate thymidylyltransferase / 0.676
1mp4 UPGGlucose-1-phosphate thymidylyltransferase / 0.669
1uuo BRFDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.652