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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5f1x ATP 78 kDa glucose-regulated protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5f1x ATP78 kDa glucose-regulated protein / 0.997
3ldo ANP78 kDa glucose-regulated protein / 0.986
3ldl ATP78 kDa glucose-regulated protein / 0.952
1ngh ATPHeat shock cognate 71 kDa protein / 0.885
1nge ATPHeat shock cognate 71 kDa protein / 0.881
1ngi ANPHeat shock cognate 71 kDa protein / 0.875
1ngj ANPHeat shock cognate 71 kDa protein / 0.875
2qwl ADPHeat shock cognate 71 kDa protein / 0.839
1ngd ADPHeat shock cognate 71 kDa protein / 0.824
1ngb ADPHeat shock cognate 71 kDa protein / 0.813
5f2r ACP78 kDa glucose-regulated protein / 0.812
1atr ADPHeat shock cognate 71 kDa protein / 0.806
3hsc ADPHeat shock cognate 71 kDa protein / 0.804
2qwn ADPHeat shock cognate 71 kDa protein / 0.803
1ats ADPHeat shock cognate 71 kDa protein / 0.771
2qwq ADPHeat shock cognate 71 kDa protein / 0.769
1ngc ADPHeat shock cognate 71 kDa protein / 0.766
3fe1 ADPHeat shock 70 kDa protein 6 / 0.762
2qwr ANPHeat shock cognate 71 kDa protein / 0.755
4k41 ATPActin, alpha skeletal muscle / 0.722
1qz5 ATPActin, alpha skeletal muscle / 0.720
1s22 ATPActin, alpha skeletal muscle / 0.719
1nlv ATPMajor actin / 0.716
4b9q ATPChaperone protein DnaK / 0.711
1c0f ATPMajor actin / 0.706
1wua ATPActin, alpha skeletal muscle / 0.700
3d2e ATPHeat shock protein homolog SSE1 / 0.693
3m6g ATPActin, alpha skeletal muscle / 0.692
4pkg ATPActin, alpha skeletal muscle / 0.692
4pl8 ATPActin, alpha skeletal muscle / 0.691
1t44 ATPActin, alpha skeletal muscle / 0.688
3wt0 ATPCell division protein FtsA / 0.687
2p9k ATPActin-related protein 2 / 0.680
4ci6 ATPActin / 0.680
3ule ATPActin-related protein 2 / 0.675
4cbx ATPActin-2 / 0.674
4h5t ADPHeat shock cognate 71 kDa protein / 0.673
1dej ATPMajor actin / 0.672
1kxp ATPActin, alpha skeletal muscle / 0.670
2v51 ATPActin, alpha skeletal muscle / 0.668
3ffk ATPActin, alpha skeletal muscle / 0.665
2q97 ATPActin, alpha skeletal muscle / 0.662
1nm1 ATPMajor actin / 0.658