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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5f1c ATP Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5f1c ATPUncharacterized protein / 1.145
1a8r GTPGTP cyclohydrolase 1 3.5.4.16 0.674
1wuq 8GTGTP cyclohydrolase 1 / 0.671
5by6 UMPThymidylate synthase / 0.659
4irr UMPThymidylate synthase / 0.657
4zgn ATPCell division cycle protein 123 / 0.657
3ojx NAPNADPH--cytochrome P450 reductase / 0.655
3mx2 TTPNucleoprotein / 0.653
3tjz GNPADP-ribosylation factor 1 / 0.652
2bc9 GNPGuanylate-binding protein 1 / 0.651
1n6m ADPProtein claret segregational / 0.650
4e5o UMPThymidylate synthase 2.1.1.45 0.650