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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5e7o MD1 DMSO reductase family type II enzyme, molybdopterin subunit

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5e7o MD1DMSO reductase family type II enzyme, molybdopterin subunit / 1.460
4ydd MD1DMSO reductase family type II enzyme, molybdopterin subunit / 1.245
5ch7 MD1DMSO reductase family type II enzyme, molybdopterin subunit / 1.237
1h5n PGDDimethyl sulfoxide/trimethylamine N-oxide reductase 1.7.2.3 0.713
2h59 APRNAD-dependent protein deacetylase / 0.671
1aa6 MGDFormate dehydrogenase H 1.1.99.33 0.664