Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5dw0 PLS Tryptophan synthase beta chain 1 4.2.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5dw0 PLSTryptophan synthase beta chain 1 4.2.1.20 1.175
1kfj PLSTryptophan synthase beta chain 4.2.1.20 1.020
2clo PLSTryptophan synthase beta chain 4.2.1.20 0.988
2trs PLSTryptophan synthase beta chain 4.2.1.20 0.829
2tys PLTTryptophan synthase beta chain 4.2.1.20 0.792
1j0b 5PAPutative 1-aminocyclopropane-1-carboxylate deaminase 3.5.99.7 0.688
1j0d 5PA1-aminocyclopropane-1-carboxylate deaminase 3.5.99.7 0.655
4d9m 0JODiaminopropionate ammonia-lyase 4.3.1.15 0.655