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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5cmx 0G6 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5cmx 0G6Prothrombin 3.4.21.5 1.083
2anm CDOProthrombin 3.4.21.5 0.767
1ae8 AZLProthrombin 3.4.21.5 0.761
1riw OSCProthrombin 3.4.21.5 0.759
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.751
2cn0 F25Prothrombin 3.4.21.5 0.748
2znk 31UProthrombin 3.4.21.5 0.745
2zhf 49UProthrombin 3.4.21.5 0.744
2zda 32UProthrombin 3.4.21.5 0.739
2zhq 27UProthrombin 3.4.21.5 0.737
1ypl RA8Prothrombin 3.4.21.5 0.736
2zg0 50UProthrombin 3.4.21.5 0.735
2zi2 24UProthrombin 3.4.21.5 0.734
3qtv 06PProthrombin 3.4.21.5 0.730
1k22 MELProthrombin 3.4.21.5 0.729
2zff 53UProthrombin 3.4.21.5 0.727
4bak M67Prothrombin 3.4.21.5 0.725
2ziq 26UProthrombin 3.4.21.5 0.723
3qwc 98PProthrombin 3.4.21.5 0.723
1ype UIPProthrombin 3.4.21.5 0.722
2gde SN3Prothrombin 3.4.21.5 0.720
3qto 10PProthrombin 3.4.21.5 0.719
3dhk 23UProthrombin 3.4.21.5 0.718
1ta2 176Prothrombin 3.4.21.5 0.716
1ypm RA4Prothrombin 3.4.21.5 0.715
4bah MELProthrombin 3.4.21.5 0.714
2zhw 12UProthrombin 3.4.21.5 0.710
3utu 1TSProthrombin 3.4.21.5 0.708
2zdv 37UProthrombin 3.4.21.5 0.707
4ban M6SProthrombin 3.4.21.5 0.706
1uvs I11Prothrombin 3.4.21.5 0.702
3p17 99PProthrombin 3.4.21.5 0.700
2cf9 348Prothrombin 3.4.21.5 0.699
2zc9 22UProthrombin 3.4.21.5 0.699
1ypj UIBProthrombin 3.4.21.5 0.698
2zfr 46UProthrombin 3.4.21.5 0.698
4ayy 9MXProthrombin 3.4.21.5 0.697
2zfp 19UProthrombin 3.4.21.5 0.694
2zf0 51UProthrombin 3.4.21.5 0.693
2zfq 45UProthrombin 3.4.21.5 0.693
1oyt FSNProthrombin 3.4.21.5 0.692
1d6w 00RProthrombin 3.4.21.5 0.690
1nzq 162Prothrombin 3.4.21.5 0.687
1vzq SHYProthrombin 3.4.21.5 0.687
1ta6 177Prothrombin 3.4.21.5 0.686
1mue CDDProthrombin 3.4.21.5 0.683
1nt1 T76Prothrombin 3.4.21.5 0.678
4baq M4ZProthrombin 3.4.21.5 0.677
1t4v 14AProthrombin 3.4.21.5 0.676
1ypg UIRProthrombin 3.4.21.5 0.675
2cf8 ESHProthrombin 3.4.21.5 0.674
2zgx 29UProthrombin 3.4.21.5 0.673
3dux 64UProthrombin 3.4.21.5 0.671
1afe ALZProthrombin 3.4.21.5 0.669
1ypk CCRProthrombin 3.4.21.5 0.668
1gmc PRO_GLY_ALA_TYRChymotrypsinogen A 3.4.21.1 0.663
1k21 IGNProthrombin 3.4.21.5 0.658
1wqv PSMCoagulation factor VII 3.4.21.21 0.658
3f68 91UProthrombin 3.4.21.5 0.655
4bam MM9Prothrombin 3.4.21.5 0.655
4ax9 N5NProthrombin 3.4.21.5 0.654
2zgb 21UProthrombin 3.4.21.5 0.653
2a2x NA9Prothrombin 3.4.21.5 0.650