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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5bnw 12V UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5bnw 12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 1.361
4gyy 12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 1.243
4n3b 12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 1.220
5c1d 12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 1.178
4gz6 12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 1.062
4n3c UD1UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 1.049
5a01 12VO-glycosyltransferase / 0.763
3w3d ATPActin, gamma-enteric smooth muscle / 0.677
4kqs IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.655
2a84 ATPPantothenate synthetase 6.3.2.1 0.653
3a5m ATPMajor actin / 0.651