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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ag4 MYA Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.793
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.730
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.719
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.717
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.715
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.709
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.707
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.703
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.691
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.690
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.676
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.660
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.647
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.641
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.550
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.536
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.528
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.506
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.478
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.473
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.456
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.438
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.436
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.423
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.414
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.408
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.390
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.328
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.155
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.043
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.940
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.923
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.884
1kuv CA5Serotonin N-acetyltransferase / 0.742
3fbu COAAcetyltransferase, GNAT family / 0.714
2ou2 ACOHistone acetyltransferase KAT5 / 0.678
1ib1 COTSerotonin N-acetyltransferase / 0.660
1t76 DHTAndrogen receptor / 0.659
1xa4 COAL-carnitine CoA-transferase / 0.659
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.657
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.656
4qvt ACOAcetyltransferase YpeA 2.3.1 0.655
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.651