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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5a88 ADP Riboflavin biosynthesis protein RibF 2.7.1.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5a88 ADPRiboflavin biosynthesis protein RibF 2.7.1.26 1.018
5a8a ADPRiboflavin biosynthesis protein RibF 2.7.1.26 0.932
1p4m ADPRiboflavin kinase 2.7.1.26 0.799
1n08 ADPRiboflavin kinase 2.7.1.26 0.785
1n07 ADPRiboflavin kinase 2.7.1.26 0.699
1n06 ADPRiboflavin kinase 2.7.1.26 0.664
2bu8 ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.656
1t6y ADPRiboflavin biosynthesis protein / 0.653