Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4zqc F6F Tryptophan synthase alpha chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4zqc F6FTryptophan synthase alpha chain / 1.066
2clf F6FTryptophan synthase alpha chain / 0.873
4y6g F6FTryptophan synthase alpha chain / 0.830
2cle F6FTryptophan synthase alpha chain / 0.815
2clm F6FTryptophan synthase alpha chain / 0.807
4xug F9FTryptophan synthase alpha chain / 0.760
1k8y 13PTryptophan synthase alpha chain / 0.738
1qoq IGPTryptophan synthase alpha chain / 0.722
2rh9 IGPTryptophan synthase alpha chain / 0.674