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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4zgs NAD Putative D-lactate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4zgs NADPutative D-lactate dehydrogenase / 0.846
1j49 NADD-lactate dehydrogenase 1.1.1.28 0.704
1dxy NADD-2-hydroxyisocaproate dehydrogenase 1.1.1 0.672
4weq NAPNAD-dependent dehydrogenase / 0.661
3kbo NDPGlyoxylate/hydroxypyruvate reductase A / 0.652