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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4z43 FAD Flavin-dependent tryptophan halogenase PrnA 1.14.19.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4z43 FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 1.355
2jkc FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 1.212
2wet FADTryptophan 5-halogenase / 1.123
2aqj FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.973
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.965
4z44 FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.922
2wes FADTryptophan 5-halogenase / 0.920
2ar8 FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.916
2apg FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.892
5hy5 FADTryptophan 6-halogenase / 0.866
2oa1 FADFlavin-dependent tryptophan halogenase RebH 1.14.19.9 0.753
2oal FADFlavin-dependent tryptophan halogenase RebH 1.14.19.9 0.741
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.704
4yxd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.702
5c2t FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.684
4x9m FADUncharacterized protein MG039 homolog / 0.683
5c3j FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.676
5dbj FADFADH2-dependent halogenase PltA / 0.675
1djq ADPTrimethylamine dehydrogenase 1.5.8.2 0.672
1y56 ATPUncharacterized protein / 0.671
4up3 FADThioredoxin reductase / 0.669
4x9n FADUncharacterized protein MG039 homolog / 0.668
3cox FADCholesterol oxidase 1.1.3.6 0.666
4u2t FADCholesterol oxidase 1.1.3.6 0.664
1kf6 FADFumarate reductase flavoprotein subunit 1.3.5.4 0.663
3f8p NADNADH oxidase/thioredoxin reductase / 0.660
3f8r NAPNADH oxidase/thioredoxin reductase / 0.659
1o94 ADPTrimethylamine dehydrogenase 1.5.8.2 0.658
3bi2 FADPolyamine oxidase FMS1 / 0.658
2tmd ADPTrimethylamine dehydrogenase 1.5.8.2 0.657
2yg6 FADPutrescine oxidase / 0.655
3of4 FMNNitroreductase / 0.655
4l82 FMNUncharacterized protein / 0.655
2iid FADL-amino-acid oxidase 1.4.3.2 0.654
1gaw FADFerredoxin / 0.653
3lov FADProtoporphyrinogen oxidase / 0.653
3sfd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.651
4kx6 FADFumarate reductase flavoprotein subunit 1.3.5.4 0.651
4u2l SFDCholesterol oxidase 1.1.3.6 0.651
4u8n FDAUDP-galactopyranose mutase / 0.651
1tdf FADThioredoxin reductase 1.8.1.9 0.650