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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4z28 BTN Hoefavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4z28 BTNHoefavidin / 1.033
4gda BTNStreptavidin / 0.945
3wyq BTNStreptavidin / 0.936
3ry2 BTNStreptavidin / 0.934
2zsc BTNTamavidin2 / 0.930
1mk5 BTNStreptavidin / 0.929
2izh BTNStreptavidin / 0.916
2izi BTNStreptavidin / 0.913
1nqm BTNStreptavidin / 0.903
1luq BTNStreptavidin / 0.901
2y3f BTNStreptavidin / 0.901
4gd9 BTNStreptavidin / 0.901
3wzn BTNStreptavidin / 0.897
1stp BTNStreptavidin / 0.887
1swr BTNStreptavidin / 0.887
3t2w BTNAvidin/streptavidin / 0.885
4yvb BTNStreptavidin / 0.884
1df8 BTNStreptavidin / 0.881
2izj BTNStreptavidin / 0.877
1rxj BNIStreptavidin / 0.875
3rdo BTNStreptavidin / 0.874
1swe BTNStreptavidin / 0.873
1i9h BNIStreptavidin / 0.869
2izf BTNStreptavidin / 0.869
1swg BTNStreptavidin / 0.867
1n43 BTNStreptavidin / 0.866
3wyp BSOStreptavidin / 0.859
3ew2 BTNHypothetical conserved protein / 0.856
2izg BTNStreptavidin / 0.853
2rtg BTNStreptavidin / 0.849
2rtd BTNStreptavidin / 0.847
1ndj BTNStreptavidin / 0.844
1mep BTNStreptavidin / 0.841
3rdq DTBStreptavidin / 0.841
2rtf BTNStreptavidin / 0.833
2c4i BTNAvidin / 0.832
4bx7 B4FStreptavidin / 0.831
2uyw BTNAvd protein / 0.826
1swt BTNStreptavidin / 0.823
2rte BTNStreptavidin / 0.821
1n9m BTNStreptavidin / 0.817
2rtm IMIStreptavidin / 0.817
1swd BTNStreptavidin / 0.814
4dne DTBStreptavidin / 0.811
1lcz BH7Streptavidin / 0.810
2rtq IMIStreptavidin / 0.799
1nc9 IMIStreptavidin / 0.798
4bcs BTNAvidin-related protein 4/5 / 0.790
1swp BTNStreptavidin / 0.784
2rtp IMIStreptavidin / 0.782
2izl IMIStreptavidin / 0.780
1swn BTNStreptavidin / 0.778
2fhn BNIAvidin-related protein 4/5 / 0.775
3vhi VHIAvidin / 0.774
1y52 BTNAvidin-related protein 4/5 / 0.765
2fhl BNIAvidin-related protein 4/5 / 0.763
4ggz BTNBll1558 protein / 0.758
1ij8 BNIAvidin / 0.745
4bj8 BTNAvidin / 0.740
3vgw NVZAvidin / 0.737
1lcw SHMStreptavidin / 0.731
1avd BTNAvidin / 0.728
2rtn IMIStreptavidin / 0.704
1rxh BNIStreptavidin / 0.686
2rti GLLStreptavidin / 0.674
2izk GLLStreptavidin / 0.673
2rtl IMIStreptavidin / 0.651