Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4z0g 5GP Inosine-5'-monophosphate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4z0g 5GPInosine-5'-monophosphate dehydrogenase / 0.975
4zqm XMPInosine-5'-monophosphate dehydrogenase / 0.909
1me7 RVPInosine-5'-monophosphate dehydrogenase / 0.808
1me8 RVPInosine-5'-monophosphate dehydrogenase / 0.808
4z87 5GPInosine-5'-monophosphate dehydrogenase / 0.807
2cu0 XMPInosine-5'-monophosphate dehydrogenase / 0.792
4qq3 XMPInosine-5'-monophosphate dehydrogenase / 0.792
1nf7 RVPInosine-5'-monophosphate dehydrogenase 2 / 0.787
2ble 5GPGMP reductase 1 / 0.776
1mew XMPInosine-5'-monophosphate dehydrogenase / 0.768
1mei XMPInosine-5'-monophosphate dehydrogenase / 0.733
2bwg 5GPGMP reductase 1 / 0.677
2a1y 5GPGMP reductase / 0.661