2.650 Å
X-ray
2002-12-13
| Name: | Inosine-5'-monophosphate dehydrogenase 2 |
|---|---|
| ID: | IMDH2_HUMAN |
| AC: | P12268 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 47.552 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.810 | 857.250 |
| % Hydrophobic | % Polar |
|---|---|
| 31.89 | 68.11 |
| According to VolSite | |

| HET Code: | RVP |
|---|---|
| Formula: | C8H11N4O8P |
| Molecular weight: | 322.169 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 72.67 % |
| Polar Surface area: | 205.72 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 62.9071 | 50.8989 | -5.32633 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3' | CB | SER- 68 | 4.22 | 0 | Hydrophobic |
| O3' | OG | SER- 68 | 2.63 | 171.24 | H-Bond (Protein Donor) |
| C5' | SD | MET- 70 | 4.31 | 0 | Hydrophobic |
| C3' | SD | MET- 70 | 3.9 | 0 | Hydrophobic |
| O1P | OG | SER- 329 | 3.2 | 154.9 | H-Bond (Protein Donor) |
| O3P | N | SER- 329 | 2.97 | 137.87 | H-Bond (Protein Donor) |
| O3' | OD1 | ASP- 364 | 2.6 | 151.79 | H-Bond (Ligand Donor) |
| O3P | N | GLY- 366 | 3.33 | 168.62 | H-Bond (Protein Donor) |
| O2P | N | GLY- 387 | 3.32 | 130.42 | H-Bond (Protein Donor) |
| O1P | N | SER- 388 | 3.11 | 172.45 | H-Bond (Protein Donor) |
| O1P | OH | TYR- 411 | 2.85 | 121.96 | H-Bond (Protein Donor) |
| N7 | N | MET- 414 | 3.09 | 127.63 | H-Bond (Protein Donor) |
| O6 | N | GLY- 415 | 2.59 | 130.26 | H-Bond (Protein Donor) |
| N1 | O | GLN- 441 | 3.05 | 153.29 | H-Bond (Ligand Donor) |
| O2P | O | HOH- 907 | 2.75 | 179.95 | H-Bond (Protein Donor) |